PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.134770.2
Common NameCsa_1G051740, LOC101205943
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 368aa    MW: 40830.8 Da    PI: 7.4986
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.134770.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.71.1e-09185232455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i +++ +L++l+P +    +k   Ka +L + ++Y++sLq
  Cucsa.134770.2 185 SHSLAERVRREKISERMKTLQRLVPGC----DKVTGKALMLDEIINYVQSLQ 232
                     8*************************9....555*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.75E-17179247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.92E-11179236No hitNo description
Gene3DG3DSA:4.10.280.106.1E-17181246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.993181231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.7E-7185232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.7E-11187237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MAAFSYQYQP FLLDSIFLHN NNPLKMGGFF DEQNFNTNCF SPFYPQDHQP QQQQQQQQQQ  60
QQEQPIYHFP DLSKQSPESS TLVDRSDSAE LPVGDQLKPA VTVTVTSPCS KKRKSRNNSS  120
ASSAQSKSNG KKAKNKGEVE EGKERDQKAK SGKKLLEEKL KDSEDGGATT GYIHVRARRG  180
QATDSHSLAE RVRREKISER MKTLQRLVPG CDKVTGKALM LDEIINYVQS LQNQVEFLSM  240
KLASLNPIFF DFRMDLDGLM IQPETTSLSS ITPTLPAMAQ CSVVSQPALI DTTPPATPSP  300
AISTGNNFPL MDPSANLFLL QQGISPSNGY SQSSQDNVKV SSWDVEDQKR KQLLISSGIG  360
DNLCYFH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819321e-119LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132661e-119LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004154003.10.0PREDICTED: transcription factor bHLH137
SwissprotQ93W881e-57BH137_ARATH; Transcription factor bHLH137
TrEMBLA0A0A0LUH50.0A0A0A0LUH5_CUCSA; Uncharacterized protein
STRINGVIT_17s0000g00430.t011e-89(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.23e-52bHLH family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]